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Extinct starfish gets ‘virtually dissected’ in 3D

The Derwent River Seastar (Credit: U. Melbourne)

Researchers have used advanced digital imaging to ‘virtually dissect’ the extinct Derwent River Seastar, confirming it as a new but extinct species without harming remaining precious specimens.

It was prickly, slimy, and had no backbone or eyes. It used its five spiny arms to cling to the sides of a muddy river bank, where it hunted by pushing its stomach out of its mouth, engulfing its prey, and dragging the liquefied remains back inside.

This was not a fairy tale troll or sea monster from Greek mythology. It was the now extinct Derwent River Seastar.

Reseachers used X-ray computed tomography (similar to a CAT scan) to formally identify the starfish as a unique species.

Starfish belong to a huge group of marine invertebrates called echinoderms that also includes sea urchins and sand dollars. These animals have pentaradial symmetry, meaning that their bodies branch out into five distinct compartments, or arms, surrounding a central disc.

derwent river seastar
There are few specimens of the now extinct Derwent River Seastar. Alan Dartnall discovered this specimen near Powder Jetty in Hobart in 1969. (Credit: Blair Patullo/Museums Victoria)

Special specimen

Over 1,000 species of echinoderm live in Australian waters, including on the rocky shorelines and deep on the ocean floor. These creatures play important roles in their environments by providing food for humans and other animals, as well as serving as a model system for research in developmental biology.

Some echinoderms can also cause major ecological damage in large numbers, like the outbreak of crown-of-thorns starfish currently gobbling up swaths of the Great Barrier Reef.

Alan Dartnall, a former curator of the Tasmanian Museum and Art Gallery, first collected the Derwent River Seastar, Marginaster littoralis, on the shore near the Tasman Bridge in Hobart in 1969, but its status as a species has since remained in question.

Even Dartnall thought it might be related to a different group of seastars called asterinids, particularly one introduced from New Zealand in the early 1900s—the New Zealand Common Cushion Star, Patiriella regularis.

Aside from its discovery under the now-demolished Powder Jetty, the Derwent River Seastar was only ever seen at four other sites. As development in Hobart and pollution from industry and humans degraded the river’s banks, the numbers of Marginaster littoralis declined dramatically. Meanwhile, the introduced New Zealand seastar became more abundant.

Targeted surveys over the next few decades failed to find the Derwent River species, and by 2009 it was listed as critically endangered.

Fast-forward to today, and the Derwent River Seastar is gone. No new specimens are likely to be found and, until recently, researchers weren’t even sure about the identity of the ones that we have.

Going virtual

The Tasmanian Museum and Art Gallery collection holds the holotype specimen, meaning the one that the species description is based on.

It looks noticeably similar in color and shape to the New Zealand Cushion Star, and was even found living side-by-side with them at the same locality where the holotype specimen was found.

Researchers had yet to examine this specimen internally by removing the outer skin, which is necessary to determine if it is a separate species.

Furthermore, many of the collected specimens had external features that appeared intermediate to the two seastar types, indicating that they may in fact have been hybrids, or crossbreeds of the two species.

Like thousands of other rare objects in museum collections, the holotype specimen of the Derwent River Seastar is too precious to physically cut apart.

Later attempts to extract DNA from individuals preserved in formalin failed, leaving the status of this enigmatic creature in doubt. Until now.

Like thousands of other rare objects in museum collections, the holotype specimen of the Derwent River Seastar is too precious to physically cut apart.

So how can we look inside this individual to see if it is indeed a unique species?

A few months ago, Senior Curator of Marine Invertebrates at Museums Victoria, Tim O’Hara, approached Christy Hipsley, research associate at the School of BioSciences at the University of Melbourne, with a question: could they use X-ray computed tomography, or CT, to solve the decades-long mystery of the Derwent River Seastar?

CT is an advanced imaging technique that combines hundreds of X-rays of an object taken over 360 degrees rotation to create a virtual three-dimensional model. The outer layers of the specimen can then be digitally “removed”, or peeled back, to reveal the inner structures. In human medicine, where it’s called a CAT scan, 3D images are typically used to detect tumors or other abnormalities that are difficult to see in a single plane.

Scan instead of slice

The GE Phoenix Nanotom microCT, one of the most advanced CT machines in the world has the ability to see through the densest materials, like metal ore-bearing rocks, or specimens as thin as a tiny aquatic worm.

The resulting 3D models can reveal structures with a resolution of less than one micron per voxel—that’s less than the width of a human hair.

In biology, and in particular paleontology and zoology, CT is increasingly used to describe, compare, and identify new species, with resulting “cybertypes” standing in as virtual avatars of the physical specimens.

Hipsley previously used CT to visualize the skeletons of preserved Tasmanian Tiger (or thylacine) joeys, and researchers are using this technique worldwide to allow non-invasive, “virtual dissection” of precious museum specimens.

So Hipsley and O’Hara decided to CT scan the holotype specimen to see what secrets lay inside.

Their results revealed the presence of internal struts that strengthen the body, making this animal an asterinid just as Dartnall originally suspected, but could not prove at the time.

They also CT scanned a similar sized specimen of the New Zealand Common Cushion Star for comparison. In contrast to their similar external appearance, analysis of the internal structures allowed us to clearly distinguish between the Derwent River local and its invasive cousin.

The verdict?

The Derwent River Seastar has a new name, Patiriella littoralis, and it’s Australia’s first recorded extinct marine animal. Of course, this isn’t a happy ending but it does showcase the power of CT technology for interacting with rare and precious specimens. And that’s a good thing, because museums are full of them.

Source: University at Melbourne

  • Virtual 3D hearts may help doctors zap diseased tissue
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    For $10, turn 2D ultrasound machines into 3D scanners

    (Credit: Getty Images)

    With a $10 microchip, it’s possible to turn a $50,000 ultrasound machine into something closer to a 3D imaging device that normally costs around $250,000, researchers report.

    “Instead of looking through a keyhole to understand what’s in the room, we can open a door and see everything in front of us.”

    The key to the technology is a fingernail-sized microchip that mounts onto a traditional ultrasound probe—the plastic scanner that slides over gel-slathered skin to relay two-dimensional images of what lies beneath.

    Just like a Nintendo Wii video game controller, the chip registers the probe’s orientation, then uses software to seamlessly stitch hundreds of individual slices of the anatomy together in three dimensions.

    The result is an instant 3D model similar in quality to a CT scan or MRI, says Joshua Broder, an emergency physician and associate professor of surgery at Duke University Health and one of the creators of the technology.

    Low cost, big pay-off

    “With 2D technology you see a visual slice of an organ, but without any context, you can make mistakes,” Broder says. “These are problems that can be solved with the added orientation and holistic context of 3D technology. Gaining that ability at an incredibly low cost by taking existing machines and upgrading them seemed like the best solution to us.”

    Broder pondered the possibilities of 3D ultrasound in 2014 while playing with a Nintendo Wii gaming system with his son, he says. With the game console’s ability to accurately track the exact position of the controller, he wondered, why not just duct-tape the controller to an ultrasound probe?

    After tinkering on his own for a year, he took sketches to Duke’s Pratt School of Engineering, connecting with then-undergraduate Matt Morgan, and biomedical engineering instructors and professors Carl Herickhoff and Jeremy Dahl, who have since taken positions at Stanford University where they continue to develop the device.

    The team used 3D printing to create their prototypes, which start with a streamlined plastic holster that slips onto the ultrasound probe. A technician can use the probe as usual, or add 3D images by simply snapping on a plastic attachment containing the location-sensing microchip. To get the best 3D images, the team also devised a plastic stand to help steady the probe as the user hones in on one part of the anatomy.

    The microchip and the ultrasound probe connect via computer cables to a laptop researchers programmed for the device. As the user scans, the computer program whips up a 3D model in seconds. 2D ultrasound machines with higher resolution have clearer 3D pictures.

    Researchers are testing the technology in clinical trials to determine how it fits in the flow of patient care. The creators believe some of the most promising uses could be when CT scans or MRIs are not available, in rural or developing areas, or when they are too risky.

    “With trauma patients in the emergency department, we face a dilemma,” Broder says. “Do we take them to the operating room not knowing the extent of their internal injuries or bleeding, or do we risk transporting them to a CT scanner, where their condition could worsen due to a delay in care? With our new 3D technique, we hope to demonstrate that we can determine the source of bleeding, measure the rate of bleeding right at the bedside, and determine whether an operation is really needed.”

    This ‘needle’ beam could mean super-sharp ultrasound

    Newborn babies are also notoriously difficult to get images of, but doctors may need numerous scans when babies are born with fluid on the brain or a congenital condition. MRI machines require patients to be still for minutes at a time, which often means sedating an infant. CT scans provide excellent 3D images, but expose the infant to radiation.

    Using the new device, Broder and colleagues were able to collect 3D images of the brain of a 7-month-old with hydrocephalus, or fluid on the brain, while the baby napped.

    ‘A beautiful technology’

    “Ultrasound is such a beautiful technology because it’s inexpensive, it’s portable, and it’s completely safe in every patient,” says Broder. “And it’s brought to the bedside and it doesn’t interfere with patient care.”

    An international patent for the device lists Broder, Herickhoff, Dahl, and Morgan as the inventors. They believe their current clinical trials and support could allow them to bring the technology to market in a couple of years.

    The team is also working to bridge some of gaps between their adapted 3D ultrasound and 3D machines already on the market, such as the ability to capture a beating heart in motion.

    “In emergency medicine, we use ultrasound to look at every part of the body—to look at blood vessels that we put catheters into, to checking on a trauma patient to see where they’re bleeding,” Broder says. “In this case we can augment 2D machines and improve every one of those applications. Instead of looking through a keyhole to understand what’s in the room, we can open a door and see everything in front of us.”

    Ultrasound and ‘cages’ get drugs to targets in brain

    Stanford University’s branch of the Wallace H. Coulter Foundation, which funds collaborative translational research projects at several universities, including Duke supported the research. A recent grant from the Emergency Medicine Foundation and General Electric will fund clinical trials for the device’s use to locate and identify bleeding and hemorrhages in patients with traumatic shock.

    The researchers demonstrated their device October 31 at the American College of Emergency Physicians (ACEP) Research Forum in Washington, DC.

    Source: Duke University