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Bacteria swap may save clownfish from killer anemones

(Credit: Getty Images)

The way clownfish rub themselves on the anemones they live in leads to a change in the makeup of microbes that cover them, according to a new study.

Having bacterial cooties in common with anemones may help the clownfish cozily nest in anemones’ venomous tentacles, a weird symbiosis that life scientists have tried to figure out for decades. For the new study, marine researchers studied how populations of microbes shifted on clownfish who mixed and mingled with fish-killing anemones.

“It’s the iconic mutualism between a host and a partner, and we knew that microbes are on every surface of each animal,” says Frank Stewart, an associate professor in Georgia Tech’s School of Biological Sciences. “In this particular mutualism, these surfaces are covered with stuff that microbes love to eat: mucus.”

Clownfish and anemones swap lots of mucus when they rub. So, the researchers brought clownfish and anemones together and analyzed the microbes in the mucus that cover the fish when anemones host them and when they don’t.

clownfish among purple anemones
Clownfish wriggle through anemones in a tank at Georgia Aquarium. Anemones usually sting, kill, and eat fish, but not clownfish. Researchers found that the microbial colonies in the slime covering clownfish shifted markedly when the nested in an anemone. Could the microbes be putting out chemical messengers that pacify the fish killer? (Credit: Georgia Tech/Ben Brumfield)

“Their microbiome changed,” says first author Zoe Pratte, a postdoctoral researcher in Stewart’s lab. “Two bacteria that we tracked in particular multiplied with contact with anemones.”

“On top of that, there were sweeping changes,” says Stewart, the study’s principal investigator. “If you looked at the total assemblages of microbes, they looked quite different on a clownfish that was hosted by an anemone and on one that was not.”

The researchers chased 12 clownfish in six fish tanks for eight weeks to swab their mucus and identify microbes through gene sequencing.

Here are some questions and answers about the experiment, which produced some amusing anecdotes, along with fascinating facts about anemones and clownfish:

Does this solve the mystery about this strange symbiosis?

No, but it’s a new approach to the clownfish-anemone conundrum.

“It’s a first step that’s asking the question, ‘Is there part of the microbial relationship that changes?'” Stewart says. The study delivered the answer on the clownfish side, which was “yes.”

An earlier hypothesis on the conundrum held that clownfish mucus was too thick to sting through. Current ideas consider that mucus swapping also covers the clownfish with anemone antigens, i.e. its own immune proteins, or that fish and fish killer may be exchanging chemical messages.

anemone eating fish
An anemone has stung and killed a fish and is eating it. This is what anemones usually do, but they make an exception for clownfish, who live happily among their venomous tentacles. (Credit: NOAA Okeanos Explorer Program, Gulf of Mexico 2012 Expedition)

“The anemone may recognize some chemical on the clownfish that keeps it from stinging,” Stewart says. “And that could involve microbes. Microbes are great chemists.”

Going forward, the researchers want to analyze mucus chemistry. They also don’t yet know to what extent the microbes on the fish change because of bacteria the fish gleans from the anemone. It’s possible the fish mucus microbiome just develops differently on the fish due to the contact.

What do anemones normally do to fish?

Kill them and eat them.

“The anemone evolved to kill fish. It shoots little poison darts into the skin of a fish to kill it then pull it into its mouth,” Stewart says. “The clownfish gets away with living right in that.”

By the way, the tentacles are not harmful to people.

“If you touch an anemone, it feels like they’re sucking on your finger,” Pratte says. “Their little harpoons feel like they’re sticking to you. It doesn’t hurt.”

What do the anemones and clownfish get out of the relationship?

For starters, they protect each other from potential prey. But there’s lots more. Some clownfish even change genders by living in an anemone.

“When they start being hosted, the fish make a big developmental switch,” Stewart says. “The first fish in a group that establishes itself in an anemone in the wild transitions from male to female, grows much bigger, and becomes the dominant member of the group.”

She is then the sole female in a school of smaller male mates.

Anemones appear to grow larger and healthier, partly because the clownfish urinate on them.

“When the fish pee, algae in the anemone take up the nitrogen then secrete sugars that feed the anemone and make it grow,” Pratte says. “Sometimes the fish drop their food, and it falls into the anemone which eats it.”

Any fun anecdotes from this experiment?

It was scientifically straightforward but laborious to carry out, partly because the researchers were taking meticulous care of the fish at the same time.

“You have to get fish and anemones to pair up, and the fish can host in other places, like nooks in the rock,” Pratte says.

“Clownfish are smarter than other fish, so they’re harder to catch, especially when we want to minimize stress on the animals,” says Alicia Caughman, an undergraduate research assistant in the School of Biological Science’s Fast Track to Research program. “We named one fish ‘Houdini.’ He could wiggle between nets and tight spaces and usually outsmart whoever was trying to catch him.”

“We also had ‘Bubbles,’ who blew a lot of bubbles, ‘Biggie’ and ‘Smalls,’ ‘Broad,’ ‘Sheila,’ ‘Earl,’ and ‘Flounder,’ who liked to flounder (flop around),” Pratte says. Clownfish have differing sizes and details in their stripes, which allow people to tell them apart.

The anemone side of the microbial question may prove harder to answer because for all Houdini’s wiles, anemones, which are squishy non-vertebrates, are even more trying. They can squeeze into uncomfortable niches or plug up the aquarium drainage, and they also have temperamental microbiomes.

They study appears in the journal Coral Reefs. The Simons Foundation funded the research. Any findings, opinions, or recommendations are those of the authors and not necessarily of the Simons Foundation.

Source: Georgia Tech