UC BERKELEY (US) — A hot spring microbe that happily chomps on plant material with temperatures near the boiling point contains an enzyme that could be used in the production of biofuels.
The microbe’s cellulose-digesting enzyme, called a cellulase, is most active at a record 109 degrees Celsius (228 degrees Fahrenheit), significantly above the 100℃ (212℉) boiling point of water.
The so-called hyperthermophilic microbe, discovered in a 95℃ (203℉) geothermal pool, is only the second member of the ancient group Archaea known to grow by digesting cellulose above 80℃. It’s cellulase is the most heat tolerant enzyme found in any cellulose-digesting microbe, including bacteria.
“These are the most thermophilic Archaea discovered that will grow on cellulose and the most thermophilic cellulase in any organism,” says Douglas S. Clark, professor of chemical and biomolecular engineering at the University of California, Berkeley. “We were surprised to find this bug in our first sample.”
“Our hope is that this example and examples from other organisms found in extreme environments—such as high-temperature, highly alkaline or acidic, or high salt environments—can provide cellulases that will show improved function under conditions typically found in industrial applications, including the production of biofuels,” Clark says.
The research is published online in the journal Nature Communications.
Many industrial processes employ natural enzymes, some of them isolated from organisms that live in extreme environments, such as hot springs. The enzyme used in the popular polymerase chain reaction to amplify DNA originally came from a thermophilic organism found in a geyser in Yellowstone National Park.
But many of these enzymes are not optimized for industrial processes, Clark says. For example, a fungal enzyme is currently used to break down tough plant cellulose into its constituent sugars so that the sugars can be fermented by yeast into alcohol. But the enzyme’s preferred temperature is about 50℃ (122℉), and it is not stable at the higher temperatures desirable to prevent other microbes from contaminating the reaction.
Hence the need to look in extreme environments for better enzymes.
“This discovery is interesting because it helps define the range of natural conditions under which cellulolytic organisms exist and how prevalent these bugs are in the natural world,” Clark says. “It indicates that there are a lot of potentially useful cellulases in places we haven’t looked yet.”
Researchers colleagues collected sediment and water samples from the 95℃ (203℉) Great Boiling Springs near the town of Gerlach in northern Nevada and grew microbes on pulverized Miscanthus gigas, a common biofuel feedstock, to isolate those that could grow with plant fiber as their only source of carbon.
After further growth on microcrystalline cellulose, researchers sequenced the community of surviving microbes to obtain a metagenome, which indicated that three different species of Archaea were able to utilize cellulose as food. Using genetic techniques, they plucked out the specific genes involved in cellulose degradation, and linked the most active high-temperature cellulase, dubbed EBI-244, to the most abundant of the three Archaea.
Based on the structure of the enzyme, “this could represent a new type of cellulase or a very unusual member of a previously known family,” Clark says.
The enzyme is so stable that it works in hot solutions approaching conditions that could be used to pretreat feedstocks like Miscanthus to break down the lignocelluloses and liberate cellulose, suggesting that cellulases may someday be used in the same reaction vessel in which feedstocks are pretreated.
The newly discovered hyperthermophilic cellulase may actually work at too high a temperature for some processes, Clark says. By collecting more hyperthermophilic cellulases, protein engineers may be able to create a version of the enzyme optimized to work at a lower temperature, but with the robust structural stability of the wild microbe.
“We might even find a cellulase that could be used as-is,” he says, “but at least they will give us information to engineer new cellulases, and a better understanding of the diversity of nature.”
Researchers from the University of Maryland contributed to the study.
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