Science & Technology - Posted by David Bricker-Indiana on Wednesday, June 30, 2010 11:58 - 6 Comments
Bacteria skedaddle when relatives start dying

Fluorescent image of a Caulobacter crescentus biofilm. Cells are labeled in red, holdfasts are labeled in blue, and eDNA is labeled in green (appears yellow when superimposed within the red band of cells). Around the biofilm, individual cells can be seen, in some cases attached to each other by holdfasts coated by eDNA (green). (Credit: Cécile Berne)
INDIANA U. (US)—The deaths of nearby relatives have a curious effect on the bacterium Caulobacter crescentus—surviving cells lose their stickiness.
Harmless Caulobacter live in nutrient-poor, aqueous environments like lakes, rivers, and even tap water. Like many other bacteria, Caulobacter form biofilms, aggregations of cells held in place by a sticky matrix produced by the bacteria themselves.
Bacteria in biofilms are more resistant to predators and to antibiotics, and are less affected by environmental stress. However, if environmental conditions worsen, it becomes advantageous for the bacteria to get away.
That presents a special problem for Caulobacter. In 2006, biologist Yves Brun, the project’s principal investigator, and Brown University colleagues learned that the sugar-protein glue the bacteria use to attach themselves to the biofilm matrix is the strongest adhesive known in nature. Once a cell joins the collective, it is stuck there.
Caulobacter solves the problem of getting stuck in poor conditions by producing a clone of itself through cell replication. The mother cell heroically stays behind. But the daughter cell, called the “swarmer,” starts out life with a flagellum, allowing it to move through water.
The daughter has the option of swimming away from its mother and its relatives in the biofilm, or of settling in the same biofilm where it was born.
The new findings reported in the journal Molecular Microbiology show that exposure to the extracellular DNA (eDNA) released by dying neighbors stops the sticky holdfasts of living Caulobacter from adhering to surfaces, preventing cells from joining bacterial biofilms.
Less sticky cells are more likely to escape established colonies, out to where conditions may be better.
“It appears that a product of cell death can help these swarmer cells sense their environment and determine if this is a good place to settle,” says Cécile Berne, a postdoctoral fellow at Indiana University and the paper’s lead author.
As is often the case in science, the discovery was a result of serendipity.
“We initially noticed that by mixing two crowded cultures of the bacterium, we would get less biofilm formation,” Berne says. “This got us thinking about the fact that throughout the living world, high population density stimulates dispersal. We set out to test whether bacteria were producing something that allowed them to switch between these two very different states of bacterial life, staying put in a biofilm or dispersing to colonize new surfaces.
“We found that eDNA released by dead cells as they lyse, or blow up, was binding directly to the holdfast of the newborn swarmer cells and making it less sticky. It’s kind of like having a sticky substance on your fingertip and covering it with dust—once the holdfast is coated with eDNA, it can’t stick to a new surface, so the cell will be more likely to swim away.”
The researchers don’t know for certain whether the escape behavior of swarmer cells is a result of happenstance—a happy accident that the holdfasts and eDNA interact—or whether the interaction represents an active process that has been modified and fine-tuned through natural selection.
Irrespective, more cells will die in worse environments, producing more eDNA, and stimulating more dispersal of the swarmer cells.
“Responding to relatives’ eDNA makes a lot of sense for a bacterium because the DNA will be almost identical,” Brun says. “What may be good for one bacterial species may be bad for another and vice versa. So you would not want to respond to DNA from another species, which has a different sequence than your and your siblings’ DNA.
“What better way to sense whether the environment is bad for your species or your type than to be sensitive to the deaths of your close relatives? Generally, biofilms are good for bacteria. But when your siblings are starting to die around you, you know it’s time to find a better place to live.”
But a major mystery remains, says postdoctoral fellow David Kysela, a coauthor of the paper.
“How does Caulobacter discriminate between its siblings’ DNA and other DNA in the environment?” Kysela asks. “Clearly there’s something special about Caulobacter DNA, since swimming cells ignore DNA from unrelated species. Everything we’ve seen so far indicates that something about the particular sequence of Caulobacter DNA is responsible, but we’re still digging. And it will be interesting to see if these species also respond to their own DNA.”
Ongoing funding to Yves Brun from the National Institutes of Health helped support the project.
More news from Indiana University: http://newsinfo.iu.edu/
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6 Comments
I doubt bacteria know that their relatives are dying. I think they unstick for reasons that involved the sticking process to begin with. Find a good environment and stick together for protection,.the better for all to enjoy it.
When there are few prospects for enjoyment OR protection, unstick to your pre stuck format. The dying is a signal, not a concept – a message that expectations should be changed.
Roy, I don’t suppose bacteria know anything.
Prem, two words: Quorum sensing.
Hasna
Not able to grasp the concept of eDNA.
sebro
The eDNA concept seems a bit hard to digest. especially with the ascribed explanation. If the environment is the problem then a protein produced in the life of the cells in the biofilm would be a more efficient signal than lysed DNA fragments.
What becomesof the DNA after the flagellated cells migrate could also be significant. This could be a mechanism for genetic dispersal, after resources in one area have been depleted. i.e. more like death of a flower and dispersal of pollen, than death in a family and immigration.

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The quotes and explanation in this are a bit confusing to me.
The eDNA binds to new cells, but is this similar to enzyme inhibition and other kinds of competition found in biology?
I don’t think I quite grasp the concept of eDNA. I’ll look it up but anyone with insight…it seems that these cells bind permanently with each other, and when they bond with the floating “parts” of exploded dead cells they can’t bond with other living cells…perhaps because bonding requires certain surface area exposure?
It seems that’s what this holdfast concept is saying.